Center for Computational and Theoretical Biology
  • ITS2 Database V: Twice as Much. Ankenbrand, M. J.; Keller, A.; Wolf, M.; Schultz, J.; Forster, F. in Mol. Biol. Evol. (2015). 32(11) 3030--3032.
     
  • ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies. Koetschan, C.; Hackl, T.; Muller, T.; Wolf, M.; Forster, F.; Schultz, J. in Mol. Phylogenet. Evol. (2012). 63(3) 585--588.
     
  • The ITS2 Database. Merget, B.; Koetschan, C.; Hackl, T.; Forster, F.; Dandekar, T.; Muller, T.; Schultz, J.; Wolf, M. in J Vis Exp (2012). (61)
     
  • Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Keller, A.; Forster, F.; Muller, T.; Dandekar, T.; Schultz, J.; Wolf, M. in Biol. Direct (2010). 5 4.
     
  • The ITS2 Database III--sequences and structures for phylogeny. Koetschan, C.; Forster, F.; Keller, A.; Schleicher, T.; Ruderisch, B.; Schwarz, R.; Muller, T.; Wolf, M.; Schultz, J. in Nucleic Acids Res. (2010). 38 D275--279.
     
  • 5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Keller, A.; Schleicher, T.; Schultz, J.; Muller, T.; Dandekar, T.; Wolf, M. in Gene (2009). 430 50--57.
     
  • ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics. Schultz, J.; Wolf, M. in Mol. Phylogenet. Evol. (2009). 52 520--523.
     
  • The ITS2 Database II: homology modelling RNA structure for molecular systematics. Selig, C.; Wolf, M.; Muller, T.; Dandekar, T.; Schultz, J. in Nucleic Acids Res. (2008). 36 D377--380.
     
  • Distinguishing species. Muller, T.; Philippi, N.; Dandekar, T.; Schultz, J.; Wolf, M. in RNA (2007). 13 1469--1472.
     
  • 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing. Seibel, P. N.; Muller, T.; Dandekar, T.; Schultz, J.; Wolf, M. in BMC Bioinformatics (2006). 7 498.
     
  • The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses. Schultz, J.; Muller, T.; Achtziger, M.; Seibel, P. N.; Dandekar, T.; Wolf, M. in Nucleic Acids Res. (2006). 34 W704--707.
     
  • A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota. Schultz, J.; Maisel, S.; Gerlach, D.; Muller, T.; Wolf, M. in RNA (2005). 11 361--364.
     
  • Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures. Wolf, M.; Achtziger, M.; Schultz, J.; Dandekar, T.; Muller, T. in RNA (2005). 11 1616--1623.